I do not believe so. I am only using two other content mods alongside this one, and neither of them implement any unique gameplay features. If you'd like, I could share my list of currently active mods...? Either this, or I can disable all but The Stars Above, and see if it still keeps up. Now that I think about it, I think this would be easier than sending a modlist...Eventually, this bug was discovered to actually be from the Dual Wielding mod. So, this is probably a different issue. Do you have mods that you think may be affecting this behavior?
Edit: I have done just that. Yes, the issue keeps persisting, even without mods. I open up the Stellar Array, pause the game, hit the green button, unpause the game, and suddenly I can no longer interact with the Spacial Disk at all. I can't imagine there's a particularly easy fix for this besides just not pressing the green button when paused.